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Unleash the power of high-dimensional biology to understand complex biological systems with our unique single-cell multiomics (scM) instruments. Your trusted partner in flow cytometry, BD Biosciences now provides high-quality scM instruments, reagents and bioinformatics tools that provide reliable, reproducible single-cell multiomics data necessary for use in translational research settings. With our microwell-based scM instruments, you can now obtain more proteomics and genomics data.


Areas of Interest: 

  • Immunology
  • Oncology
  • Rare and Infectious Disease
  • Biomarker Discovery
  • Cell Therapy
  • Vaccine and Drug Development

The NEW BD Rhapsody™ HT Xpress System

A higher throughput, accelerated time-to-insight microwell-based partitioning system

Easily run million-cell studies on an expanded throughput system with flexible capture and analysis of multiomic information. The BD Rhapsody™ HT Xpress System provides a broader cell input range (100–440,000 cell per cartridge) on the NEW BD Rhapsody™ 8-Lane Cartridge, enabling capture of more than 320,000 cells per cartridge without compromising performance. The system is also compatible with the BD Rhapsody™ Scanner for the visual workflow QC with a NEW multisample workflow.

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BD Rhapsody™ Scanner

A visual workflow QC system that can be combined with a microwell-based single-cell partitioning system

Implement quality control measures at every step of the single-cell workflow allowing for real-time decision making regarding the quality of your input sample. The BD Rhapsody Scanner is compatible for use with the BD Rhapsody HT Xpress System and BD Rhapsody 8-Lane Cartridge for higher throughput applications. It can also be used in combination with the BD Rhapsody Express System and BD Rhapsody Single-Lane Cartridge for lower throughput needs. We recommend using the system when quality control is important, for users new to single-cell workflows, for the development of single-cell protocols, and when working with novel cell types or complex cell systems. The system allows control over every experiment and provides the ability to troubleshoot and optimize single-cell capture without sequencing.

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BD Rhapsody™ Express System

A microwell-based single-cell partitioning system

Capture and analyze multiomic information from hundreds to thousands of single cells using a simple cartridge workflow and a multitier barcoding system. The system provides powerful single-cell partitioning and can be combined with the BD RhapsodyScanner for the visual workflow QC option. Recommended for experienced users working with established single-cell preparation methods and standard cell types. 

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Our Leadership in Single-Cell Multiomics Instruments

Reaching new frontiers in high-dimensional biology

BD Biosciences flow cytometry instruments have enabled researchers like you to successfully conduct high-parametric flow cytometry analysis for over 45 years. Our scM instruments extend this capability and facilitate the analysis of hundreds of genes and proteins simultaneously at the single-cell level. Use scM instruments to access the vast wealth of information that exists at multiple levels in a cell to better understand biological networks that underlie phenotypic responses.


Providing a seamless and complete workflow

Our instruments fit seamlessly in cell sorting and analysis workflows, allowing you to take advantage of the benefits of our analyzers and sorters and add the power of single-cell analysis. The BD Multiomics Portfolio offers a complete end-to-end workflow for the analysis of single-cells with instruments for robust single-cell partitioning, BD® AbSeq Assays and other reagents for single-cell analyses, and bioinformatics support and SeqGeq™ Software for analysis of single-cell data.



Streamlined transfer of a high-parameter flow cytometry panel from cell analyzer to cell sorter prior to in-depth single-cell multiomic analysis of murine lymphocyte subpopulations.

A complete single-cell multiomics solution


Getting help from single-cell experts

Our scM team works with you at every step to provide support and training you need to conduct your single-cell analysis successfully. Explore our resources and bioinformatics support tools to understand our system capabilities, plan your experiments and analyze your results.

Visit us at to view our resource library, learning center and FAQs or to file a ticket for help. 


In need of instrument technical support

BD technical service support is here to help with instrument support. Contact us by phone at 877.232.8995, prompt 2, then prompt 1, 5 a.m. to 5 p.m. PT or online.

Ordering the BD Rhapsody™ HT Single-Cell Analysis System

Fast track single-cell research without compromise

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For Research Use Only. Not for use in diagnostic or therapeutic procedures.