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The analysis platform to extract insights from scRNA-seq data

SeqGeq™ v1.6 Software is a device-agnostic desktop bioinformatics platform designed for the analysis of single-cell experiments and developed by the makers of FlowJo™ Software. SeqGeq™ Software includes a wide suite of informatics features including: V(D)J analysis, Seurat clustering, Monocle trajectory inference and much more.


SeqGeq™ Software allows researchers to perform advanced analysis, data exploration and visualization with an easy-to-use drag-and-drop interface familiar to anyone who uses FlowJo™ Software. SeqGeq™ Software generates quality figures that are easily shared for publication and collaboration.




The latest release of SeqGeq™ v1.6 Software

  • Mouse-Over Information shown for both cells and genes within Graph Windows. This means that researchers can now very quickly determine the identity of individual dots in their plots with ease. We’ve also added the ability to pin the parameter names in GeneView plots to graphs within the Layout Editor, so that these annotations become available for export and publication.
  • High-Resolution Figures—up to 4096 x 4096 pixels—are now available. This will make your figures for publication pop in a way never possible. In addition, the seed for contour plots is now adjustable to better illustrate populations of any size within that plot type.
  • Dot Shapes can be adjusted within dot plots and dot plot overlays in the Layout Editor. Dot Sizes are also now editable on a layer-by-layer basis within the overlays.